About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4001432_4001936_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4001432 - 4001936
Intron Length:
505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGGA
5'SS Class:
strong_major
3'SS Sequence:
CTCCGTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TCTGCCTGACTA
Flanking Amino Acid:
GNHAFFQEFEELKEVGKEQP
Intron Amino Acid Position:
1715

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.5
38.7
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
66.8
0.38
0.9
59.7
35.6
Minor 5ss
30.3
-2.3
3.3
38
46.8
Minor BPS
49.9
-0
1.9
63.53
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005477
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005702
3991303 - 4022202
30900