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Intron Name: Anas_platyrhynchos_platyrhynchos_27_4003210_4005819_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4003210 - 4005819

Intron Length:

2610

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAGAT

5'SS Class:

strong_major

3'SS Sequence:

TGCTTTGCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAT

U12 Branch Point Sequence:

TGATGCACAACT

Flanking Amino Acid:

NGKLKANEQYRFSIAAFTKY

Intron Amino Acid Position:

1603

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

0.8

80.3

Major BPS

66.4

0.41

1.1

56.9

40.5

Major PPT

69.1

0.43

0.9

61.7

Minor 5ss

26.7

-2.7

3.3

37.5

47.2

Minor BPS

47.6

-0.1

2.2

71.43

44.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005477

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005702

3991303 - 4022202

30900