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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4006780_4007344_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4006780 - 4007344
Intron Length:
565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTTCGTATG
5'SS Class:
major
3'SS Sequence:
GTCTCCTTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAG
U12 Branch Point Sequence:
CCTGCCATATCC
Flanking Amino Acid:
SSTKPLAVPMEPNPVEDVQC
Intron Amino Acid Position:
1395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.3
65
46.4
Major BPS
52.4
0.06
1.5
53
42.8
Major PPT
78
0.63
0.8
72.5
32.2
Minor 5ss
34.2
-1.8
2.8
35.4
40.8
Minor BPS
47.4
-0.2
2
58.62
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005477
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005702
3991303 - 4022202
30900