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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4008579_4009101_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4008579 - 4009101
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
CCTCTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
CCTTCACTGATA
Flanking Amino Acid:
TPAGNVSNWTYPLAPQNVYM
Intron Amino Acid Position:
1214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
70.8
41
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
81.3
0.7
0.7
72.7
32.1
Minor 5ss
34
-1.8
2.9
43.2
43.8
Minor BPS
47.6
-0.1
1.9
59.91
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005477
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005702
3991303 - 4022202
30900