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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4011626_4011916_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4011626 - 4011916
Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAA
U12 Branch Point Sequence:
TTTTCTCCAACT
Flanking Amino Acid:
SLPRNTSGCTVPAAPTNLSL
Intron Amino Acid Position:
851

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
55.5
0.14
1.3
66.7
39.7
Major PPT
89.7
0.89
0.6
84.8
22.9
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
65.6
0.57
1.9
89.17
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005477
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005702
3991303 - 4022202
30900