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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4013559_4014112_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4013559 - 4014112
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
TCTCCTCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TGCTGCTCACTG
Flanking Amino Acid:
SSVRSVSEWTYPLAPSGVTL
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.3
36.2
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
82.3
0.73
0.7
80.3
24.9
Minor 5ss
33.3
-1.9
3.4
44.7
43.5
Minor BPS
42.6
-0.6
2.2
47.73
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005477
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005702
3991303 - 4022202
30900