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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4014386_4014754_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4014386 - 4014754
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTCTC
5'SS Class:
major
3'SS Sequence:
TTACCTGTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAG
U12 Branch Point Sequence:
TAGCCCTTACCT
Flanking Amino Acid:
SAPRRVTNWTYPLPPERLTL
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.3
36.2
Major BPS
51.1
0.03
1.5
51.4
43.9
Major PPT
69.1
0.43
0.9
61.7
39.7
Minor 5ss
35.8
-1.6
3.1
49.2
40.2
Minor BPS
65.8
0.57
1.7
78.81
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005477
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005702
3991303 - 4022202
30900