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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4015559_4017247_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4015559 - 4017247
Intron Length:
1689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
CCTTCCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCATAAC
U12 Branch Point Sequence:
TAACCCTGACCA
Flanking Amino Acid:
VDGPNATAWTYPLSPTNVTL
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
72.3
34.3
Major BPS
53
0.08
1.1
55.6
36
Major PPT
82
0.72
0.7
73
31.9
Minor 5ss
31.6
-2.1
2.7
34
41.5
Minor BPS
52.4
0.07
1.8
64.48
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005477
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005702
3991303 - 4022202
30900