Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4017515_4018009_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4017515 - 4018009

Intron Length:

495

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGAGG

5'SS Class:

major

3'SS Sequence:

GCTTTCCCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTCAC

U12 Branch Point Sequence:

ACTGCCGAATCT

Flanking Amino Acid:

QASTSIHQWTAPSIPTQLRL

Intron Amino Acid Position:

223

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

1.1

64.3

47.1

Major BPS

76.2

0.65

0.9

77.4

26.5

Major PPT

0.56

0.8

35.9

Minor 5ss

30.3

-2.3

3.3

39.2

46.3

Minor BPS

41.4

-0.5

2.4

61.33

48.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005477

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005702

3991303 - 4022202

30900