About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4021262_4022136_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4021262 - 4022136
Intron Length:
875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TTGGCCACATCT
Flanking Amino Acid:
VPQLLGTLAEGEGCNRTARA
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
69.7
41.3
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
74.9
0.56
0.8
66
35.9
Minor 5ss
39.1
-1.2
3
51.7
45
Minor BPS
45.9
-0.2
2.1
69.12
47.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005477
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005702
3991303 - 4022202
30900