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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4034942_4038020_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4034942 - 4038020
Intron Length:
3079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGACC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TACTCATTCATC
Flanking Amino Acid:
LASLYHHEKQVFLHKFKSKE
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
73
34.7
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
83.4
0.75
0.7
76.5
32.1
Minor 5ss
32.1
-2
3.3
43.2
44.2
Minor BPS
50.4
-0
2
64.46
41.3

Associated Gene:

Gene:
SLC45A3
Ensembl Gene ID:
ENSAPLG00000005321
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005488
4034474 - 4058500
24027