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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4069998_4070913_R

Intron Information:

Intron Rank:
150967
Intron Class:
major
Intron Phase:
Intron Coordinates:
4069998 - 4070913
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGATTTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
78.7
37.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.9
0.79
0.8
77
37.3
Minor 5ss
35.4
-1.7
3.2
40.3
45.6
Minor BPS
65.2
0.47
1.3
69.89
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028729
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045534
4069224 - 4071798
2575