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Intron Name: Anas_platyrhynchos_platyrhynchos_27_4079080_4079780_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4079080 - 4079780

Intron Length:

701

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTCTA

5'SS Class:

strong_major

3'SS Sequence:

TTATTTTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

ACTTTTATAAGC

Flanking Amino Acid:

KMPKPRLKATVTPSPVKGKG

Intron Amino Acid Position:

227

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

74.1

38.4

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

93.1

0.97

0.7

92.4

Minor 5ss

-2.2

3.2

40.2

45.9

Minor BPS

48.7

-0.1

1.9

60.52

39.2

Associated Gene:

Gene:

NUCKS1

Ensembl Gene ID:

ENSAPLG00000026584

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042731

4076904 - 4090124

13221

ENSAPLT00000033404

4076904 - 4092457

15554