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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4085607_4089200_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4085607 - 4089200
Intron Length:
3594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCATTTTAACA
Flanking Amino Acid:
LGTSSRNRKVVDYSQ
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
71.8
39.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.2
0.68
0.9
76.7
36.1
Minor 5ss
31.9
-2.1
2.9
43.6
43.3
Minor BPS
70.7
0.65
1.2
75.15
36.6

Associated Gene:

Gene:
NUCKS1
Ensembl Gene ID:
ENSAPLG00000026584
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042731
4076904 - 4090124
13221