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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4085607_4092440_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4085607 - 4092440
Intron Length:
6834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCATTTTAACA
Flanking Amino Acid:
MSRPVRNRKVVDYSQ
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
80.5
33.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.2
0.68
0.9
76.7
36.1
Minor 5ss
31.4
-2.1
2.9
42.1
44.5
Minor BPS
70.7
0.65
1.2
75.15
36.6

Associated Gene:

Gene:
NUCKS1
Ensembl Gene ID:
ENSAPLG00000026584
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033404
4076904 - 4092457
15554