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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4098938_4100010_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4098938 - 4100010
Intron Length:
1073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGCAGC
5'SS Class:
major
3'SS Sequence:
TCTCCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TGAAACTTAAAA
Flanking Amino Acid:
PVPCLLLANKCDLSPWAVTR
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
66
40.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
88.4
0.86
0.7
83.7
24.3
Minor 5ss
36
-1.6
2.9
43.3
38.2
Minor BPS
55.6
0.17
1.7
64.99
40.1

Associated Gene:

Gene:
RAB29
Ensembl Gene ID:
ENSAPLG00000004926
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005090
4098037 - 4103461
5425