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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4101496_4103337_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4101496 - 4103337
Intron Length:
1842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
GGGGATTCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
TTTTTGGGGATT
Flanking Amino Acid:
FNRHYKSTVGVDFALKVVQW
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
62.4
0.28
1.1
50.8
47.8
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
42
-0.5
2.6
70.54
41.3

Associated Gene:

Gene:
RAB29
Ensembl Gene ID:
ENSAPLG00000004926
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005090
4098037 - 4103461
5425