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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4109854_4114454_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4109854 - 4114454
Intron Length:
4601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTGGCTACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAA
U12 Branch Point Sequence:
TTCTGGCTACTC
Flanking Amino Acid:
TTTISNFHSQVNRTYCCGTY
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
65.6
0.39
0.9
55.7
32.1
Major PPT
68.8
0.42
1
65.7
40.1
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
37.8
-0.9
2.6
53.96
44.7

Associated Gene:

Gene:
RSBN1
Ensembl Gene ID:
ENSAPLG00000004887
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005037
4104943 - 4119066
14124