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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4114593_4115023_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4114593 - 4115023
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGCAGT
5'SS Class:
major
3'SS Sequence:
TCTGTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATCTCATTCAGT
Flanking Amino Acid:
DMLEESPFLRMTLPWGTLSS
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
66.4
45.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
81
0.7
0.8
80.5
31.5
Minor 5ss
42.4
-0.8
2.9
54.3
43.8
Minor BPS
48
-0
2.3
71.16
45.6

Associated Gene:

Gene:
RSBN1
Ensembl Gene ID:
ENSAPLG00000004887
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005037
4104943 - 4119066
14124