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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4116115_4117057_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4116115 - 4117057
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TATCTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTCCTGTAATT
Flanking Amino Acid:
GVLKAVQFGEWSDQPRITKD
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
80.6
31.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.3
0.7
0.8
73.9
36.4
Minor 5ss
37.1
-1.5
2.7
44.2
37.1
Minor BPS
58.8
0.35
2
79.48
36.9

Associated Gene:

Gene:
RSBN1
Ensembl Gene ID:
ENSAPLG00000004887
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005037
4104943 - 4119066
14124