About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4123863_4124211_F

Intron Information:

Intron Rank:
3
Intron Class:
major_hybrid
Intron Phase:
1
Intron Coordinates:
4123863 - 4124211
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTGAATGTCGAG|G
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
TTTTCCTTGAAT
Flanking Amino Acid:
PDLIDVDLIRGSTFAKAKPE
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
36.2
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
48.4
-0
1.8
50.6
46.9
Minor 5ss
30.7
-2.2
3.2
38
46.8
Minor BPS
83.9
1.15
1.2
96.8
27.6

Associated Gene:

Gene:
PHTF1
Ensembl Gene ID:
ENSAPLG00000004512
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004656
4123534 - 4133654
10121