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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4124371_4125038_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4124371 - 4125038
Intron Length:
668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTTGATACAATT
Flanking Amino Acid:
MWLLVLYLMQVIAVVLYFMI
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
92.7
0.96
0.6
91.8
19.2
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
45.8
-0.2
2
69.93
41.4

Associated Gene:

Gene:
PHTF1
Ensembl Gene ID:
ENSAPLG00000004512
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004656
4123534 - 4133654
10121