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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4126857_4127648_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4126857 - 4127648
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGCA
5'SS Class:
major
3'SS Sequence:
TCTGCATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTCATCTTATTT
Flanking Amino Acid:
KLSDAEKSHQDDCTNRDGIS
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
59.7
39.3
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
79
0.65
0.9
69.6
40.6
Minor 5ss
28.5
-2.5
3.6
39.4
46
Minor BPS
60.2
0.4
1.6
75.79
41.6

Associated Gene:

Gene:
PHTF1
Ensembl Gene ID:
ENSAPLG00000004512
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004656
4123534 - 4133654
10121