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Intron Name: Anas_platyrhynchos_platyrhynchos_27_4129946_4130519_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4129946 - 4130519

Intron Length:

574

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGCTTA

5'SS Class:

strong_major

3'SS Sequence:

TTTTAATTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

GTGTTTTTAATT

Flanking Amino Acid:

MCVAERTYKQRFLFAKLFSH

Intron Amino Acid Position:

547

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

0.9

76.7

34.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

87.2

0.84

0.8

81.7

34.6

Minor 5ss

62.3

0.42

2.3

Minor BPS

72.2

0.78

1.1

79.65

37.1

Associated Gene:

Gene:

PHTF1

Ensembl Gene ID:

ENSAPLG00000004512

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004656

4123534 - 4133654

10121