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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4130871_4131862_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4130871 - 4131862
Intron Length:
992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTGCTTTCAAT
Flanking Amino Acid:
LSIAFICCAQVLKGHKTFLN
Intron Amino Acid Position:
620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
72.9
0.52
1
66.3
38.7
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
57.2
0.31
2
80.63
41.5

Associated Gene:

Gene:
PHTF1
Ensembl Gene ID:
ENSAPLG00000004512
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004656
4123534 - 4133654
10121