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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4132019_4132399_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4132019 - 4132399
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTCCA
5'SS Class:
major
3'SS Sequence:
GTTTATGTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCGTCTGTAATG
Flanking Amino Acid:
SNISILLTEQINLYLKMEKK
Intron Amino Acid Position:
672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.2
62.7
43.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
74.9
0.56
1
68.4
41.9
Minor 5ss
39
-1.2
3
51.6
44.8
Minor BPS
50.9
-0.1
2.1
58.09
44.8

Associated Gene:

Gene:
PHTF1
Ensembl Gene ID:
ENSAPLG00000004512
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004656
4123534 - 4133654
10121