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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4132496_4133132_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4132496 - 4133132
Intron Length:
637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTCTCTTACTG
Flanking Amino Acid:
VLKLSTKLLKELDTPFRLYG
Intron Amino Acid Position:
704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
78.8
0.65
0.8
74.4
29.2
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
60.9
0.21
1.7
68.07
40.1

Associated Gene:

Gene:
PHTF1
Ensembl Gene ID:
ENSAPLG00000004512
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004656
4123534 - 4133654
10121