About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4133259_4133633_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4133259 - 4133633
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TATCTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TCATTCTCAATA
Flanking Amino Acid:
VSDLLGFNIRLWKIKP*
Intron Amino Acid Position:
746

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.8
33.6
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
87.3
0.84
0.7
84.9
29.4
Minor 5ss
40.6
-1.1
2.8
47.9
41.8
Minor BPS
62
0.37
1.5
67.85
39

Associated Gene:

Gene:
PHTF1
Ensembl Gene ID:
ENSAPLG00000004512
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004656
4123534 - 4133654
10121