Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4153123_4153675_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4153123 - 4153675

Intron Length:

553

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATATACA

5'SS Class:

major

3'SS Sequence:

TTATTTTCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

TACATTTTATTT

Flanking Amino Acid:

AEVPLLILRGGPPSPTKTGK

Intron Amino Acid Position:

659

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.6

0.7

75.7

33.3

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

90.1

0.9

0.7

89.2

27.5

Minor 5ss

41.5

-0.9

2.6

52.1

44.5

Minor BPS

49.9

0.07

1.6

64.72

40.6

Associated Gene:

Gene:

MAGI3

Ensembl Gene ID:

ENSAPLG00000002599

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047510

4138716 - 4195755

57040

ENSAPLT00000002727

4137178 - 4195755

58578