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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4156756_4157695_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4156756 - 4157695
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
CTTTTGTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTCTTCTGAACT
Flanking Amino Acid:
EDPQYGTYYVDHINQKTQFE
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.5
37.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85.8
0.8
0.8
80
32.2
Minor 5ss
36.6
-1.5
3.3
47.2
42.3
Minor BPS
75.5
0.88
1.4
88.41
36.6

Associated Gene:

Gene:
MAGI3
Ensembl Gene ID:
ENSAPLG00000002599
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047510
4138716 - 4195755
57040
ENSAPLT00000002727
4137178 - 4195755
58578