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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4157754_4159912_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4157754 - 4159912
Intron Length:
2159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTACTGTAATT
Flanking Amino Acid:
AKAPEDCEDGELPYGWEKIE
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
82.9
24
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79.2
0.66
0.8
74.3
35.1
Minor 5ss
34.2
-1.8
3.2
46.6
48.7
Minor BPS
55.8
0.26
2
75.87
41.7

Associated Gene:

Gene:
MAGI3
Ensembl Gene ID:
ENSAPLG00000002599
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047510
4138716 - 4195755
57040
ENSAPLT00000002727
4137178 - 4195755
58578