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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4221209_4221534_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4221209 - 4221534
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CATTTGCTAATT
Flanking Amino Acid:
EKKISSQHINEPFQLPLWGV
Intron Amino Acid Position:
1004

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
0.9
75.8
35.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
89.3
0.88
0.6
88.8
20.5
Minor 5ss
37.7
-1.4
3
45.4
43.9
Minor BPS
47.2
-0.1
2.3
68.95
42.5

Associated Gene:

Gene:
LRIG2
Ensembl Gene ID:
ENSAPLG00000001904
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002002
4220457 - 4236594
16138