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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4223264_4223745_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4223264 - 4223745
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGC
5'SS Class:
major
3'SS Sequence:
TTCTGCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TCACTGTTAATT
Flanking Amino Acid:
KNEDYSITNTEEMNLPADIP
Intron Amino Acid Position:
860

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
67.2
39.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
83.1
0.75
0.8
77
31.7
Minor 5ss
36.4
-1.5
3.4
50.2
46.4
Minor BPS
51.3
0.12
2
69.41
42

Associated Gene:

Gene:
LRIG2
Ensembl Gene ID:
ENSAPLG00000001904
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002002
4220457 - 4236594
16138