About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4224196_4224808_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4224196 - 4224808
Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTATTGCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CCTTCTCTATTG
Flanking Amino Acid:
LSANATLTVLETPSFIRPLE
Intron Amino Acid Position:
710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
78.7
0.65
0.9
72.3
37.7
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
46
-0.4
2
50.99
44.3

Associated Gene:

Gene:
LRIG2
Ensembl Gene ID:
ENSAPLG00000001904
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002002
4220457 - 4236594
16138