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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4229249_4230056_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4229249 - 4230056
Intron Length:
808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTACGTATT
5'SS Class:
major
3'SS Sequence:
GCTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAT
U12 Branch Point Sequence:
GGGTGCTTGTCT
Flanking Amino Acid:
AFAGLSRLDKLILQGNQIKS
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
75.3
40.5
Major BPS
67.4
0.43
1.1
57.1
41.8
Major PPT
80.7
0.69
0.9
76.9
37.3
Minor 5ss
43.5
-0.7
3.2
69.6
40.8
Minor BPS
39.6
-0.7
3.6
64.36
46.1

Associated Gene:

Gene:
LRIG2
Ensembl Gene ID:
ENSAPLG00000001904
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002002
4220457 - 4236594
16138