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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4233052_4233294_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4233052 - 4233294
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
TCAATATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTTGTTCAATA
Flanking Amino Acid:
AWEFCQRLSELDLSYNQLTR
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
68.7
42
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.2
0.61
0.9
73.7
40.5
Minor 5ss
39.8
-1.1
3.1
61.7
42.2
Minor BPS
52.5
0.07
1.9
66.76
40.7

Associated Gene:

Gene:
LRIG2
Ensembl Gene ID:
ENSAPLG00000001904
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002002
4220457 - 4236594
16138