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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4235771_4236241_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4235771 - 4236241
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
ACTTTTCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
IDLSVRTLQEVKMNYNELSE
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
66.1
40.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.9
0.58
1
79.8
31.9
Minor 5ss
42.5
-0.8
2.8
53.5
43.7
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
LRIG2
Ensembl Gene ID:
ENSAPLG00000001904
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002002
4220457 - 4236594
16138