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Intron Name: Anas_platyrhynchos_platyrhynchos_27_4249856_4251542_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

4249856 - 4251542

Intron Length:

1687

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAATCACA

5'SS Class:

major

3'SS Sequence:

TTGTCCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTCAG

U12 Branch Point Sequence:

CTGTGCTCAGCT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

1.1

66.2

39.1

Major BPS

55.8

0.14

1.6

65.3

43.7

Major PPT

0.74

0.8

77.6

31.1

Minor 5ss

39.9

-1.1

2.8

47.1

43.2

Minor BPS

47.1

-0.1

2.2

67.86

48.6

Associated Gene:

Gene:

SLC16A1

Ensembl Gene ID:

ENSAPLG00000000583

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038935

4249172 - 4256066

6895