About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4251801_4253970_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4251801 - 4253970
Intron Length:
2170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
AGTAACTCATCT
Flanking Amino Acid:
SIMLAVMYAGGPISSILVNK
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
81.2
0.7
0.8
73.2
37.2
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
46.3
-0.2
2
65.97
43.7

Associated Gene:

Gene:
SLC16A1
Ensembl Gene ID:
ENSAPLG00000000583
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037288
4250524 - 4256066
5543
ENSAPLT00000000719
4251543 - 4256199
4657
ENSAPLT00000038935
4249172 - 4256066
6895