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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4254115_4254611_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4254115 - 4254611
Intron Length:
497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
GAATCCTTCATT
Flanking Amino Acid:
ELYFCVGVVGGLGLAFNLNP
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
75.8
34.3
Major BPS
75
0.62
1.1
77.2
36
Major PPT
88.7
0.87
0.6
84.5
23.3
Minor 5ss
32.5
-2
3.1
35.2
41.4
Minor BPS
62.5
0.48
1.8
75.02
41.5

Associated Gene:

Gene:
SLC16A1
Ensembl Gene ID:
ENSAPLG00000000583
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037288
4250524 - 4256066
5543
ENSAPLT00000000719
4251543 - 4256199
4657
ENSAPLT00000038935
4249172 - 4256066
6895