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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4256063_4256192_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4256063 - 4256192
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGGGAC
5'SS Class:
major
3'SS Sequence:
CATTTTTAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCATTTTTAACC
Flanking Amino Acid:
EDGVKEEESHML*
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
65.6
34
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
72.8
0.51
1
67.1
42.6
Minor 5ss
26.5
-2.7
3.5
36.1
41.4
Minor BPS
73.7
0.72
1.1
74.26
36.7

Associated Gene:

Gene:
SLC16A1
Ensembl Gene ID:
ENSAPLG00000000583
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032711
4251543 - 4256199
4657
ENSAPLT00000000719
4251543 - 4256199
4657