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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4326750_4327470_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4326750 - 4327470
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTCCGTGCC
5'SS Class:
weak_major
3'SS Sequence:
TTGTTTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TACTATTTATTT
Flanking Amino Acid:
SGNKVKTTKVPAN*
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.6
0.09
1.6
59.4
41
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.5
0.87
0.7
88.2
29.1
Minor 5ss
29.7
-2.3
3.2
35.4
33.7
Minor BPS
52.4
0.15
1.8
69.6
41.9

Associated Gene:

Gene:
TAFA3
Ensembl Gene ID:
ENSAPLG00000016404
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017120
4326739 - 4328934
2196