About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4328308_4328881_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4328308 - 4328881
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGGGCCAT
5'SS Class:
weak_major
3'SS Sequence:
TGCCATCCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTCCAT
U12 Branch Point Sequence:
GGCTCTGCCATC
Flanking Amino Acid:
SPVWLICIVLVHCTCRGAVA
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.5
0.08
1.2
48.8
43.5
Major BPS
62.1
0.3
1.4
72.5
43.5
Major PPT
69.5
0.44
0.9
65.7
35.7
Minor 5ss
34.7
-1.7
3.5
47.2
48.2
Minor BPS
37
-1
2.2
43.23
38.8

Associated Gene:

Gene:
TAFA3
Ensembl Gene ID:
ENSAPLG00000016404
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017120
4326739 - 4328934
2196