About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4354753_4354896_R


Intron Information:

Intron Rank:
19

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
4354753 - 4354896

Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTACGGCAC

5'SS Class:
major

3'SS Sequence:
TTCCCTTCTCCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
CCCTCAC

U12 Branch Point Sequence:
AAGCCCTCACTC

Flanking Amino Acid:
FNLGFLKNPKRLNVALTRAK

Intron Amino Acid Position:
1072

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
78.6
0.68
1
64.1
42.1

Major BPS
60.1
0.25
1.1
62.9
34.3

Major PPT
84.3
0.77
0.7
76.7
32

Minor 5ss
30
-2.3
3.4
41
45.6

Minor BPS
46.1
-0.3
1.8
51.83
39.3

Associated Gene:

Gene:
MOV10

Ensembl Gene ID:

Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

4353969 - 4360735
6767