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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4355203_4355280_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4355203 - 4355280
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CGTGCCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TGCAGCGTACCG
Flanking Amino Acid:
IGIIAPYRKQVEKIQKAITT
Intron Amino Acid Position:
1005

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
54
0.1
1
59.7
32.6
Major PPT
73.2
0.52
0.9
65.6
36
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
38.1
-1
2.5
44.13
47.4

Associated Gene:

Gene:
MOV10
Ensembl Gene ID:
ENSAPLG00000015955
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016673
4353969 - 4360735
6767