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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4355676_4355837_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4355676 - 4355837
Intron Length:
162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGATG
5'SS Class:
major
3'SS Sequence:
CTACCTCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCCTAC
U12 Branch Point Sequence:
CTTGTCCTACCT
Flanking Amino Acid:
QFVTKLLWNYRSHEAILRIP
Intron Amino Acid Position:
899

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
69.5
42.7
Major BPS
46.5
-0.2
1.4
44.1
40.5
Major PPT
73.7
0.53
0.8
65.2
36
Minor 5ss
29
-2.4
3.4
38.2
47
Minor BPS
48.4
-0
2.1
71.51
45.7

Associated Gene:

Gene:
MOV10
Ensembl Gene ID:
ENSAPLG00000015955
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016673
4353969 - 4360735
6767