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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4358181_4358377_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4358181 - 4358377
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGGT
5'SS Class:
major
3'SS Sequence:
CTCCTCTACCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
TCTCCTCTACCC
Flanking Amino Acid:
VITEEGVPPVSSLKNELEKE
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68
43.2
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
72.4
0.5
0.9
65
35.3
Minor 5ss
29.9
-2.3
3.8
46.9
48.5
Minor BPS
48.9
-0.1
1.9
64.24
41.6

Associated Gene:

Gene:
MOV10
Ensembl Gene ID:
ENSAPLG00000015955
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016673
4353969 - 4360735
6767