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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4359160_4359305_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4359160 - 4359305
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAT
U12 Branch Point Sequence:
GTGCCTGGCACC
Flanking Amino Acid:
VHGESVHFKKGKKRVVVADQ
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
63.8
0.34
1.2
54.7
43.1
Major PPT
74.8
0.56
0.8
69
31.5
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
38.7
-0.9
2.3
49.03
41.1

Associated Gene:

Gene:
MOV10
Ensembl Gene ID:
ENSAPLG00000015955
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016673
4353969 - 4360735
6767