Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4365133_4365608_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4365133 - 4365608

Intron Length:

476

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCTGC

5'SS Class:

strong_major

3'SS Sequence:

TGTCTTTGTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTGAT

U12 Branch Point Sequence:

TTAGTGATAACC

Flanking Amino Acid:

AQVAAVLKIQVHYYEDGNVQ

Intron Amino Acid Position:

151

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

73.2

39.3

Major BPS

73.5

0.58

1.2

63.4

44.3

Major PPT

77.5

0.62

0.9

77.1

37.1

Minor 5ss

44.2

-0.6

2.9

59.3

45.5

Minor BPS

46.1

-0.3

2.3

63.46

42.1

Associated Gene:

Gene:

CAPZA1

Ensembl Gene ID:

ENSAPLG00000015264

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015937

4362835 - 4367765

4931

ENSAPLT00000022099

4363703 - 4369329

5627