Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4366803_4367681_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4366803 - 4367681

Intron Length:

879

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGGAA

5'SS Class:

strong_major

3'SS Sequence:

TCTTATTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

AATTTCTTATTT

Flanking Amino Acid:

PVKIEGYDEQVLITEHGDLG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.94

0.8

78.3

31.1

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

88.9

0.87

0.7

83.5

31.2

Minor 5ss

28.5

-2.5

3.5

37.1

47.5

Minor BPS

66.2

0.59

1.5

79.09

37.2

Associated Gene:

Gene:

CAPZA1

Ensembl Gene ID:

ENSAPLG00000015264

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022099

4363703 - 4369329

5627

ENSAPLT00000015937

4362835 - 4367765

4931